Publications

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2022
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Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs

Li, Xuanji ; Rensing, Christopher ; Vestergaard, Gisle ; Arumugam, Manimozhiyan ; Nesme, Joseph ; Gupta, Shashank ; Brejnrod, Asker Daniel ; Sørensen, Søren Johannes
in: Environment International, vol: 158

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2022     |    DOI: https://doi.org/10.1016/j.envint.2021.106899

 

Vaginal dysbiosis in pregnancy associates with risk of emergency cesarean section: a prospective cohort study

Haahr, Thor ; Clausen, Tine Dalsgaard ; Thorsen, Jonathan ; Rasmussen, Morten A. ; Mortensen, Martin S. ; Lehtimäki, Jenni ; Shah, Shiraz A. ; Hjelmsø, Mathis H. ; Bønnelykke, Klaus ; Chawes, Bo L. ; Vestergaard, Gisle ; Jacobsson, Bo ; Larsson, Per-Göran ; Brix, Susanne ; Sørensen, Søren J. ; Bisgaard, Hans ; Stokholm, Jakob
in: Clinical Microbiology and Infection, vol: 28, issue: 4, pages: 588-595

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2022     |    DOI: https://doi.org/10.1016/j.cmi.2021.08.028

2021
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Microbial hotspots in lithic microhabitats inferred from dna fractionation and metagenomics in the atacama desert

Schulze-Makuch, Dirk ; Lipus, Daniel ; Arens, Felix L. ; Baqué, Mickael ; Bornemann, Till L.V. ; Devere, Jean Pierre ; Flury, Markus ; Frösler, Jan ; Heinz, Jacob ; Hwang, Yunha ; Kounaves, Samuel P. ; Mangelsdorf, Kai ; Meckenstock, Rainer U. ; Pannekens, Mark ; Probst, Alexander J. ; Sáenz, Johan S. ; Schirmack, Janosch ; Schloter, Michael ; Schmitt-Kopplin, Philippe ; Schneider, Beate ; Uhl, Jenny ; Vestergaard, Gisle ; Valenzuela, Bernardita ; Zamorano, Pedro ; Wagner, Dirk
in: Microorganisms, vol: 9, issue: 5

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.3390/microorganisms9051038

 

Microbial Key Players Involved in P Turnover Differ in Artificial Soil Mixtures Depending on Clay Mineral Composition

Tanuwidjaja, Irina ; Vogel, Cordula ; Pronk, Geertje J. ; Schöler, Anne ; Kublik, Susanne ; Vestergaard, Gisle Alberg ; Kögel-Knabner, Ingrid ; Mrkonjic Fuka, Mirna ; Schloter, Michael ; Schulz, Stefanie
in: Microbial Ecology, vol: 81, pages: 897–907

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1007/s00248-020-01635-1

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Soil bacterial diversity is positively correlated with decomposition rates during early phases of maize litter decomposition

Chiba, Akane ; Uchida, Yoshitaka ; Kublik, Susanne ; Vestergaard, Gisle ; Buegger, Franz ; Schloter, Michael ; Schulz, Stefanie
in: Microorganisms, vol: 9, issue: 2

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.3390/microorganisms9020357

 

The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition

Li, Xuanji ; Stokholm, Jakob ; Brejnrod, Asker ; Vestergaard, Gisle Alberg ; Russel, Jakob ; Trivedi, Urvish ; Thorsen, Jonathan ; Gupta, Shashank ; Hjelmsø, Mathis Hjort ; Shah, Shiraz A. ; Rasmussen, Morten Arendt ; Bisgaard, Hans ; Sørensen, Søren Johannes
in: Cell Host and Microbe, vol: 29, issue: 6, pages: 975-987

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1016/j.chom.2021.03.017

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Urbanized microbiota in infants, immune constitution and later risk of atopic diseases

Lehtimäki, Jenni ; Thorsen, Jonathan ; Rasmussen, Morten Arendt ; Hjelmsø, Mathis ; Shah, Shiraz ; Mortensen, Martin S. ; Trivedi, Urvish ; Vestergaard, Gisle Alberg ; Bønnelykke, Klaus ; Chawes, Bo Lund ; Brix, Susanne ; Sørensen, Søren J. ; Bisgaard, Hans ; Stokholm, Jakob
in: Journal of Allergy and Clinical Immunology, vol: 148, issue: 1, pages: 234-243

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1016/j.jaci.2020.12.621

2020
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Biological Soil Crusts from Different Soil Substrates Harbor Distinct Bacterial Groups with the Potential to Produce Exopolysaccharides and Lipopolysaccharides

Cania, Barbara ; Vestergaard, Gisle Alberg ; Kublik, Susanne ; Köhne, John Maximilian ; Fischer, Thomas ; Albert, Andreas ; Winkler, Barbro ; Schloter, Michael ; Schulz, Stefanie
in: Microbial Ecology, vol: 79, pages: 326–341

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2020     |    DOI: https://doi.org/10.1007/s00248-019-01415-6

 

Changes induced by heavy metals in the plant-associated microbiome of Miscanthus x giganteus

Zadel, Urška ; Nesme, Joseph ; Michalke, Bernhard ; Vestergaard, Gisle ; Płaza, Grażyna A. ; Schröder, Peter ; Radl, Viviane ; Schloter, Michael
in: Science of the Total Environment, vol: 711

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2020     |    DOI: https://doi.org/10.1016/j.scitotenv.2019.134433

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Definition of core bacterial taxa in different root compartments of dactylis glomerata, grown in soil under different levels of land use intensity

Estendorfer, Jennifer ; Stempfhuber, Barbara ; Vestergaard, Gisle Alberg ; Schulz, Stefanie ; Rillig, Matthias C. ; Joshi, Jasmin ; Schröder, Peter ; Schloter, Michael
in: Diversity, vol: 12, issue: 10

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2020     |    DOI: https://doi.org/10.3390/d12100392