Publications

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2021
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NetTCR-2.0 enables accurate prediction of TCR-peptide binding by using paired TCRα and β sequence data

Montemurro, Alessandro ; Schuster, Viktoria ; Povlsen, Helle Rus ; Bentzen, Amalie Kai ; Jurtz, Vanessa ; Chronister, William D. ; Crinklaw, Austin ; Hadrup, Sine R. ; Winther, Ole ; Peters, Bjoern ; Jessen, Leon Eyrich ; Nielsen, Morten
in: Communications Biology, vol: 4, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2021     |    DOI: https://doi.org/10.1038/s42003-021-02610-3

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Reduced expression of OXPHOS and DNA damage genes is linked to protection from microvascular complications in long-term type 1 diabetes

Özgümüş, Türküler ; Sulaieva, Oksana ; Jessen, Leon Eyrich ; Jain, Ruchi ; Falhammar, Henrik ; Nyström, Thomas ; Catrina, Sergiu Bogdan ; Jörneskog, Gun ; Groop, Leif ; Eliasson, Mats ; Eliasson, Björn ; Brismar, Kerstin ; Stokowy, Tomasz ; Nilsson, Peter M. ; Lyssenko, Valeriya
in: Scientific Reports, vol: 11, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2021     |    DOI: https://doi.org/10.1038/s41598-021-00183-z

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TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors

D. Chronister, William ; Crinklaw, Austin ; Mahajan, Swapnil ; Vita, Randi ; Koşaloğlu-Yalçın, Zeynep ; Yan, Zhen ; A. Greenbaum, Jason ; Jessen, Leon E. ; Nielsen, Morten ; Christley, Scott ; G. Cowell, Lindsay ; Sette, Alessandro ; Peters, Bjoern
in: Frontiers in Immunology, vol: 12

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2021     |    DOI: https://doi.org/10.3389/fimmu.2021.640725

2020
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Conference Report: Why R? 2019

Burdukiewicz, Michal ; Pietluch, Filip ; Chilimoniuk, Jaroslaw ; Sidorczuk, Katarzyna ; Rafacz, Dominik ; Jessen, Leon Eyrich ; Roediger, Stefan ; Kosinski, Marcin ; Wojcik, Piotr
in: The R Journal, vol: 12, issue: 1, pages: 484-494

Type: Journal article

Status: Published     |    År: 2020

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Immunopeptidomic Data Integration to Artificial Neural Networks Enhances Protein-Drug Immunogenicity Prediction

Barra, Carolina ; Ackaert, Chloe ; Reynisson, Birkir ; Schockaert, Jana ; Jessen, Leon Eyrich ; Watson, Mark ; Jang, Anne ; Comtois-Marotte, Simon ; Goulet, Jean-Philippe ; Pattijn, Sofie ; Paramithiotis, Eustache ; Nielsen, Morten
in: Frontiers in Immunology, vol: 11

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2020     |    DOI: https://doi.org/10.3389/fimmu.2020.01304

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Liver nucleotide biosynthesis is linked to protection from vascular complications in individuals with long-term type 1 diabetes

Jain, Ruchi ; Özgümüş, Türküler ; Jensen, Troels Mygind ; du Plessis, Elsa ; Keindl, Magdalena ; Møller, Cathrine Laustrup ; Falhammar, Henrik ; Nyström, Thomas ; Catrina, Sergiu Bogdan ; Jörneskog, Gun ; Jessen, Leon Eyrich ; Forsblom, Carol ; Haukka, Jani K. ; Groop, Per Henrik ; Rossing, Peter ; Groop, Leif ; Eliasson, Mats ; Eliasson, Björn ; Brismar, Kerstin ; Al-Majdoub, Mahmoud ; Nilsson, Peter M. ; Taskinen, Marja Riitta ; Ferrannini, Ele ; Spégel, Peter ; Berg, Tore Julsrud ; Lyssenko, Valeriya
in: Scientific Reports, vol: 10, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2020     |    DOI: https://doi.org/10.1038/s41598-020-68130-y

2019
 

Dissecting the T cell receptor interactions governing recognition of peptide-MHC complexes

Bentzen, Amalie Kai ; Such, Lina ; Jensen, K. K. ; Marquard, Andrea Marion ; Jessen, Leon Eyrich ; Miller, N. J. ; Church, C. D. ; Lyngaa, Rikke Birgitte ; Koelle, D. M. ; Becker, J. C. ; Linnemann, C. ; Schumacher, T. N. M. ; Marcatili, Paolo ; Nghiem, P. ; Nielsen, M. ; Hadrup, Sine Reker
in: European Journal of Immunology, vol: 49, issue: Suppl. 3 SI, pages: 1787-1787
Presented at:
17th International Congress of Immunology

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    År: 2019

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TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes

Jensen, Kamilla Kjærgaard ; Rantos, Vasileios ; Jappe, Emma Christine ; Olsen, Tobias Hegelund ; Jespersen, Martin Closter ; Jurtz, Vanessa Isabell ; Jessen, Leon Eyrich ; Lanzarotti, Esteban ; Mahajan, Swapnil ; Peters, Bjoern ; Nielsen, Morten ; Marcatili, Paolo
in: Scientific Reports, vol: 9, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    År: 2019     |    DOI: https://doi.org/10.1038/s41598-019-50932-4

2018
 

Conference Report: Why R? 2018

Burdukiewicz, Michal ; Karas, Marta ; Jessen, Leon Eyrich ; Kosinski, Marcin ; Bischl, Bernd ; Roediger, Stefan
in: The R Journal, vol: 10, issue: 2, pages: 572-578

Type: Journal article

Status: Published     |    År: 2018

 

Erratum to: Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis (Nature Genetics, (2018), 50, 8, (1072-1080), 10.1038/s41588-018-0157-1)

Waage, Johannes ; Standl, Marie ; Curtin, John A. ; Jessen, Leon E. ; Thorsen, Jonathan ; Tian, Chao ; Schoettler, Nathan ; Flores, Carlos ; Abdellaoui, Abdel ; Ahluwalia, Tarunveer S. ; Alves, Alexessander C. ; Amaral, Andre F.S. ; Antó, Josep M. ; Arnold, Andreas ; Barreto-Luis, Amalia ; Baurecht, Hansjörg ; van Beijsterveldt, Catharina E.M. ; Bleecker, Eugene R. ; Bonàs-Guarch, Sílvia ; Boomsma, Dorret I. ; Brix, Susanne ; Bunyavanich, Supinda ; Burchard, Esteban G. ; Chen, Zhanghua ; Curjuric, Ivan ; Custovic, Adnan ; den Dekker, Herman T. ; Dharmage, Shyamali C. ; Dmitrieva, Julia ; Duijts, Liesbeth ; Ege, Markus J. ; Gauderman, W. James ; Georges, Michel ; Gieger, Christian ; Gilliland, Frank ; Granell, Raquel ; Gui, Hongsheng ; Hansen, Torben ; Heinrich, Joachim ; Henderson, John ; Hernandez-Pacheco, Natalia ; Holt, Patrick ; Imboden, Medea ; Jaddoe, Vincent W.V. ; Jarvelin, Marjo Riitta ; Jarvis, Deborah L. ; Jensen, Kamilla K. ; Jónsdóttir, Ingileif ; Kabesch, Michael ; Bisgaard, Hans ; ,
in: Nature Genetics, vol: 50, issue: 9, pages: 1343

Type: Comment/debate (Peer reviewed)

Status: Published     |    År: 2018     |    DOI: https://doi.org/10.1038/s41588-018-0197-6