Publications

Publikationer rss feed

2021
  PDF

Automated download and clean-up of family specific databases for kmer-based virus identification

Allesøe, Rosa Lundbye ; Lemvigh, Camilla Koldbæk ; Phan, My V T ; Clausen, Philip Thomas Lanken Conradsen ; Florensa, Alfred Ferrer ; Koopmans, Marion P G ; Lund, Ole ; Cotten, Matthew
in: Bioinformatics, vol: 37, issue: 5, pages: 705–710

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1093/bioinformatics/btaa857

  PDF

Clinical implications of intrinsic molecular subtypes of breast cancer for sentinel node status

Rossing, Maria ; Pedersen, Christina Bligaard ; Tvedskov, Tove ; Vejborg, Ilse ; Talman, Maj Lis ; Olsen, Lars Rønn ; Kroman, Niels ; Nielsen, Finn Cilius ; Jensen, Maj Britt ; Ejlertsen, Bent
in: Scientific Reports, vol: 11, issue: 1

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1038/s41598-021-81538-4

 

Progressive immune dysfunction with advancing disease stage in renal cell carcinoma

Braun, David A ; Street, Kelly ; Burke, Kelly P. ; Cookmeyer, David L. ; Denize, Thomas ; Pedersen, Christina B. ; Gohil, Satyen H. ; Schindler, Nicholas ; Pomerance, Lucas ; Hirsch, Laure ; Bakouny, Ziad ; Hou, Yue ; Forman, Juliet ; Huang, Teddy ; Li, Shuqiang ; Cui, Ang ; Keskin, Derin B. ; Steinharter, John ; Bouchard, Gabrielle ; Sun, Maxine ; Pimenta, Erica M. ; Xu, Wenxin ; Mahoney, Kathleen M. ; McGregor, Bradley A. ; Hirsch, Michelle S. ; Chang, Steven L. ; Livak, Kenneth J. ; McDermott, David F. ; Shukla, Sachet A. ; Olsen, Lars R. ; Signoretti, Sabina ; Sharpe, Arlene H. ; Irizarry, Rafael A. ; Choueiri, Toni K. ; Wu, Catherine J.
in: Cancer Cell

Type: Journal article (Peer reviewed)

Status: Accepted/In press     |    Year: 2021     |    DOI: https://doi.org/10.1016/j.ccell.2021.02.013

  PDF

Transcriptional characterization of human megakaryocyte polyploidization and lineage commitment

Choudry, Fizzah A. ; Bagger, Frederik O. ; Macaulay, Iain C. ; Farrow, Samantha ; Burden, Frances ; Kempster, Carly ; McKinney, Harriet ; Olsen, Lars R. ; Huang, Ni ; Downes, Kate ; Voet, Thierry ; Uppal, Rakesh ; Martin, John F. ; Mathur, Anthony ; Ouwehand, Willem H. ; Laurenti, Elisa ; Teichmann, Sarah A. ; Frontini, Mattia
in: Journal of Thrombosis and Haemostasis, vol: 19, issue: 5, pages: 1236-1249

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2021     |    DOI: https://doi.org/10.1111/jth.15271

2020
  PDF

Adoptive cell therapy in combination with checkpoint inhibitors in ovarian cancer

Kverneland, Anders Handrup ; Pedersen, Magnus ; Westergaard, Marie Christine Wulff ; Nielsen, Morten ; Borch, Troels Holz ; Olsen, Lars Rønn ; Aasbjerg, Gitte ; Santegoets, Saskia J. ; van der Burg, Sjoerd H. ; Milne, Katy ; Nelson, Brad H. ; Met, Özcan ; Donia, Marco ; Svane, Inge Marie
in: OncoTarget, vol: 11, issue: 22, pages: 2092-2105

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2020     |    DOI: https://doi.org/10.18632/oncotarget.27604

 

Algorithmic Clustering Of Single-Cell Cytometry Data-How Unsupervised Are These Analyses Really?

Pedersen, Christina Bligaard ; Olsen, Lars Rønn
in: Cytometry. Part A, vol: 97, issue: 3, pages: 219–221

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2020     |    DOI: https://doi.org/10.1002/cyto.a.23917

  PDF

Changes in the tumor immune microenvironment during disease progression in patients with ovarian cancer

Westergaard, Marie Christine Wulff ; Milne, Katy ; Pedersen, Magnus ; Hasselager, Thomas ; Olsen, Lars Rønn ; Anglesio, Michael S. ; Borch, Troels Holz ; Kennedy, Mia ; Briggs, Gillian ; Ledoux, Stacey ; Kreuzinger, Caroline ; von der Decken, Isabel ; Donia, Marco ; Castillo-Tong, Dan Cacsire ; Nelson, Brad H. ; Svane, Inge Marie
in: Cancers, vol: 12, issue: 12

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2020     |    DOI: https://doi.org/10.3390/cancers12123828

 

Genetic Determinants and Evolutionary History of Richter's Syndrome

Parry, Erin Michelle ; Guieze, Romain ; Leshchiner, Ignaty ; Rosebrock, Daniel ; Persaud, Bria ; Lemvigh, Camilla Koldbæk ; Tausch, Eugen ; Davids, Matthew S. ; Bloehdorn, Johannes ; Schneider, Christof ; Elagina, Liudmila ; Martinez, Aina Zurita ; Taylor-Weiner, Amaro ; Jain, Nitin ; Wierda, William G. ; Rassenti, Laura Z. ; Kipps, Thomas J. ; Broséus, Julien ; Cymbalista, Florence ; Kay, Neil E. ; Livak, Kenneth J. ; Li, Shuqiang ; Huang, Teddy ; Purroy, Noelia ; Anandappa, Annabelle J. ; Fernandes, Stacey M. ; Utro, Filippo ; Rhrissorrakrai, Kahn ; Levovitz, Chaya ; Danysh, Brian P. ; Slowik, Kara ; Parikh, Sameer A. ; Brown, Jennifer R. ; Parida, Laxmi ; Neuberg, Donna S. ; Stilgenbauer, Stephan ; Getz, Gad ; Wu, Catherine J.
in: Blood, vol: 136, issue: Supplement 1, pages: 47-48

Type: Conference abstract in journal (Peer reviewed)

Status: Published     |    Year: 2020     |    DOI: https://doi.org/10.1182/blood-2020-139456

  PDF

Peptide Vaccination Against PD-L1 With IO103 a Novel Immune Modulatory Vaccine in Multiple Myeloma

Jørgensen, Nicolai Grønne ; Klausen, Uffe ; Grauslund, Jacob Handlos ; Helleberg, Carsten ; Aagaard, Thomas Granum ; Do, Trung Hieu ; Ahmad, Shamaila Munir ; Olsen, Lars Rønn ; Klausen, Tobias Wirenfeldt ; Breinholt, Marie Fredslund ; Hansen, Morten ; Martinenaite, Evelina ; Met, Özcan ; Svane, Inge Marie ; Knudsen, Lene Meldgaard ; Andersen, Mads Hald
in: Frontiers in Immunology, vol: 11

Type: Journal article (Peer reviewed)

Status: Published     |    Year: 2020     |    DOI: https://doi.org/10.3389/fimmu.2020.595035

2019
 

Analysis of Mass Cytometry Data

Pedersen, Christina B. ; Olsen, Lars R.
part of: Mass Cytometry: Methods and Protocols, pages: 267-279, 2019

Type: Book chapter (Peer reviewed)

Status: Published     |    Year: 2019     |    DOI: https://doi.org/10.1007/978-1-4939-9454-0_17