Machine learning predicts side effects from chemotherapy

Thursday 25 Jun 20
|
by Tom Nervil

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Sara Garcia
PhD student
DTU Health Tech

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Ramneek Gupta
Groupleader, Associate Professor
DTU Health Tech
+45 45 25 24 22

In collaboration with Rigshospitalet, researchers from DTU Health Technology have developed a machine learning model that can predict chemotherapy-associated nephrotoxicity, a particularly significant side effect in patients treated with cisplatin.

Testicular cancer is the most common cancer in young men. The number of new cases is increasing worldwide. There is a relatively high survival rate, with 95% surviving after 10 years - if detected in time and treated properly. However, the standard chemotherapy includes cisplatin, which has a wide range of long-term side effects, one of which can be nephrotoxicity.

“In testicular cancer patients, cisplatin-based chemotherapy is essential to ensure a high cure rate. Unfortunately, treatment can cause side effects, including renal impairment. However, we are not able to pinpoint who ends up having side effects and who does not,” says Jakob Lauritsen from Rigshospitalet.

Patient data is key to knowledge

The researchers therefore asked the question: How far can we go in predicting nephrotoxicity risk in these patients using machine learning? First, it required some patient data.

"Using a cohort of testicular-cancer patients from Denmark– in collaboration with Rigshospitalet, we developed a machine learning predictive model to tackle this problem" says Sara Garcia, a researcher at DTU Health Technology, who, together with Jakob Lauritsen, are the first authors of an article published recently in JNCI Cancer Spectrum.

The high-quality of Danish patient records allowed the identification of key patients, and a technology partnership between DMAC and YouDoBio facilitated DNA collection from patients at their homes using postal delivered saliva kits. The project, originally funded by the Danish Cancer Society, saw the development of several analyses strategies of genomics and patient data, bringing forward the promise of artificial intelligence for integration of diverse data streams.

Best predictions for low-risk patients

A risk score for an individual to develop nephrotoxicity during chemotherapy was generated, and key genes likely at play were proposed. Patients were classified into high, low, and intermediate risk. For the high-risk, the model was able to correctly predict 67% of affected patients, while for the low-risk, the model correctly predicted 92% of the patients that did not develop nephrotoxicity.

“Understanding how and where AI technologies can be applied in clinical care, is increasingly important also in the future of responsible AI. Despite patient data complexity, the high quality of Danish registries and clinical research make it a great environment for exploring new data methodologies” says Ramneek Gupta. “Being able to predict late side-effects will ultimately give us the opportunity for preventive action  and improved quality of life” adds Gedske Daugaard, who is joint senior author with Ramneek Gupta.

You can read the full article in JNCI Cancer Spectrum.

Illustration

Illustration: The scientists at DTU Health Tech use artificial intelligence (AI) to combine clinical files and genetics for predicting patient outcome

Facts

Objective of the study: Personalized medicine - each patient receives the medicine that is best for him or her.

Machine learning is an area of computer science and artificial intelligence that enables computers to learn without explicitly programming how learning is done.

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